P-DOR Outbreak Reconstruction

P-DOR is our tool for rapid outbreak detection and reconstruction. The tool is user friendly and can integrate  clinical metadata.

Available on github

Citation:

Gherard Batisti Biffignandi, Greta Bellinzona, Greta Petazzoni, Davide Sassera, Gian Vincenzo Zuccotti, Claudio Bandi, Fausto Baldanti, Francesco Comandatore, Stefano Gaiarsa, P-DOR, an easy-to-use pipeline to reconstruct bacterial outbreaks using genomics, Bioinformatics, Volume 39, Issue 9, September 2023, btad571, https://doi.org/10.1093/bioinformatics/btad571